FastQCFastQC Report
Wed 15 May 2024
EGAF00005787419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53693370
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1393390.2595087624412474No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA565680.10535378949021079No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC559130.10413389958574028No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)