FastQCFastQC Report
Tue 14 May 2024
EGAF00005787421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61562900
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1683050.27338705616532033No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA693010.11256942086873752No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC684730.11122445498831277No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)