FastQCFastQC Report
Wed 15 May 2024
EGAF00005787443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55702344
Total Bases7.9 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1683440.3022206749504114No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA633160.11366846608824935No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC589050.10574958928119794No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)