FastQCFastQC Report
Thu 2 May 2024
EGAF00005787475

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787475
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37330042
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCCGAGGAGGAGGGGGGAACGGGGGGCGGACGGGGCCGGGGGGGTAGG668810.17916133070517307No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT491760.1317330422505284No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)