FastQCFastQC Report
Wed 15 May 2024
EGAF00005787479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57870320
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1671240.28879052336327155No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA641190.11079772843834283No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC622730.1076078376618619No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)