FastQCFastQC Report
Wed 15 May 2024
EGAF00005787489

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787489
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67930801
Total Bases9.7 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1377600.2027946056458248No Hit
GGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAG736120.10836321509001491No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG736070.10835585465862534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)