FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005787503

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787503
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52289128
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1939700.3709566546988506No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA721300.13794454556595398No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC702680.13438357587451066No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA584160.11171729618439995No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT573940.10976277898533708No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)