FastQCFastQC Report
Mon 13 May 2024
EGAF00005787514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences76137428
Total Bases10.9 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGAGACTCTGGCATGCTAACTAGTTACGCGACCCCCGAGCGGTCGGCGTC1647000.216319363979566No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC847340.11129086209741679No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA839310.11023619027424987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)