FastQCFastQC Report
Thu 16 May 2024
EGAF00005787545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67441848
Total Bases9.6 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2441320.3619888944917405No Hit
TTTTTATTTATTTTTATTTTATTTTATTTTTTATTTTTTTTTTTTTTTTT1148790.17033785906934223No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA883120.13094540351266767No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC861060.1276744373908615No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT823360.12208443635767514No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA787840.11681767676354302No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)