FastQCFastQC Report
Fri 3 May 2024
EGAF00005787598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46877620
Total Bases6.6 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTC617930.1318176989360808No Hit
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG541440.1155007442783998No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA536290.11440213901644325No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)