FastQCFastQC Report
Wed 27 Apr 2022
EGAF00005787598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46877620
Sequences flagged as poor quality0
Sequence length15-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGATCTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTC617890.13180916607967724No Hit
TGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGATCTGGCTGGCTAGG539870.11516582966456061No Hit
CTGGCTGCGACATCTGTCACCCCATTGATCGCCAGGGTTGATTCGGCTGA536010.11434240902161842No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)