FastQCFastQC Report
Thu 16 May 2024
EGAF00005787605

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787605
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58719453
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length15-151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT2691400.4583489563501213No Hit
CGGGGATGGTCGTCCTCTTCGACCGAGCGCGCAGCTTCGGGAGGGACGCA1008910.17181869865170576No Hit
GGAGGTTCTAGCAGGGGAGCGCAGCTACTCGTATACCCTTGACCGAAGAC1004410.1710523427389557No Hit
CTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCT924400.15742653461025938No Hit
GGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGA916650.15610669942718983No Hit
GCGGAGGAGAGTAGTCTGAATTGGGTTATGAGGTCCCCTGCGGGGTACCT643470.10958378648384208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)