FastQCFastQC Report
Wed 15 May 2024
EGAF00005787709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51123006
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5293741.0354907534193118No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC715890.14003284548643324No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG596050.11659134441351121No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)