FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005787715

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787715
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48762293
Sequences flagged as poor quality0
Sequence length150
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2817920.5778891488962589No Hit
CTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCC804810.16504761168634954No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG668130.13701775673264585No Hit
CGGTGGCGCACGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGACAGGAGG641390.13153401133125547No Hit
GGACGACCTTCCCCGAATAGAGGAGGACCGGTCTTCGGTCAAGGGTATAC494940.10150055904877156No Hit
CAGGAGGATCGCTTGAGTCCAGGAGTTCTGGGCTGTAGTGCGCTATGCCG493590.10122370578430347No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)