FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005787820

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005787820
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67432727
Sequences flagged as poor quality0
Sequence length151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGACGCACCTCGGCCAACAGACCACCACACCGTCGGGACAATGACCA1570220.2328572593542005No Hit
CCCACCACACCTGCAGCGCCGAGCCGACCCGAAACACGACGGCCCCCCGG1544490.22904160467957937No Hit
CACGGGACCGAGAAAGACTGGTGAGGCAGCGGTCCGGGAGGCGCCGACGC1272480.18870362457683196No Hit
GGCAGGAGAGACCGGACAGCGGCCAGCCCCCGGCGAGAAGCGGAGGCGGA1225470.1817322321845296No Hit
CTCCGTTCTCGCCCTCGCTCTCCCTCCACACAAGCCGGAGGGTGCGCGGC1175980.1743930658476855No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAATGGACCTTG1016460.1507368966407068No Hit
CGGGACAGGAGCGGGGAGGACACGCGAGGCCAGAAAAGCGTGGCATCGGG1010640.14987381423859664No Hit
CTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAACGGG1007070.14934439771359093No Hit
CCCGGGACAGGAGCGGGGAGGACACGCGAGGCCAGAAAAGCGTGGCATCG991380.14701763433058254No Hit
GGAGAGAGGAAAAAAGACCGGCTGCGGCGAGCGGGGAGGGGGGAACGACA978960.14517579868896596No Hit
CCTCCTTCTCTCCTCGACCCCCCTCTCACGGGCTTCTCAGACACAAACGG902780.13387861356993616No Hit
CCCAGCGCAAGACCCAAACACACACAGACAACCACCGCAGGGCGACCGAC898290.13321276477518104No Hit
CTCCCTCGCAACGCCACCGGGGATACCACCTCTCTCCGTTCTCGCCCTCG842500.12493933398244446No Hit
CACCACACCTGCAGCGCCGAGCCGACCCGAAACACGACGGCCCCCCGGGA835820.12394871706730769No Hit
CCGAGAAGCACACAGCACGCACCACGCGCGGCGCAGGCCCGCGTCGCGGG833140.12355128393368994No Hit
GCACGGGCGAGGGCGGGAACGGCGGAGCGGGAAGAAGCCGCGAGCGCGGA828690.12289136697675003No Hit
CAGGAGAGACCGGACAGCGGCCAGCCCCCGGCGAGAAGCGGAGGCGGAGG807130.1196941063943625No Hit
CTCGCAACGCCACCGGGGATACCACCTCTCTCCGTTCTCGCCCTCGCTCT805180.11940492930087197No Hit
CCGAGAAAGACTGGTGAGGCAGCGGTCCGGGAGGCGCCGACGCGAGGCCA800670.11873611458720927No Hit
CTCGACGCTTACAAGAAACAGCGCGTGCACACACCAGACGGGAAGGGTAT751580.11145626662851704No Hit
CTCCCCTGAGCAGTCCCACCACACCTGCAGCGCCGAGCCGACCCGAAACA733670.10880028624676562No Hit
GTGGGACAGGACCAGGCGGGACAGAGAGCGCGAGAGAGGAGGAGGAGGCG723290.10726097433372374No Hit
CCGGGACAGGAGCGGGGAGGACACGCGAGGCCAGAAAAGCGTGGCATCGG710120.10530791673307234No Hit
GTCGGGGAACCGGGAAGCCCCCTGACCCTCCGGGCGAAGCCAGGAGTCCG696520.10329109187590768No Hit
GGCACGGGACCGAGAAAGACTGGTGAGGCAGCGGTCCGGGAGGCGCCGAC682210.10116897689752335No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)