EGAF00005787856 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787856
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	138684372
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	300355	0.21657451064493408	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	218037	0.15721814711754256	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	216564	0.1561560231170099	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	206786	0.149105481041512	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	192318	0.1386731592222951	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	179834	0.12967142397270257	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	179817	0.1296591659224588	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	171554	0.12370103244221345	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	167437	0.12073242109788694	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	160825	0.1159647606148442	No Hit
CCCCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGG	155943	0.11244453700954857	No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	149375	0.10770860324478378	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	50100	56.258724	6
CCGCGTT	54485	51.730976	7
AGACCGC	55130	50.794186	4
TCGACCG	79400	49.952732	145
CAGACCG	59510	47.828648	3
CTCGCTA	104345	41.117126	1
GCGTTCT	71010	39.55049	9
TCGCTAT	113930	37.612347	2
GTGCTCT	136980	37.3449	145
CGCTATG	124515	34.58954	3
CGCGTTC	84400	33.231037	8
ACCGCTA	20045	31.977047	2
GACCGCG	90470	31.1755	5
CTTCGAC	102805	29.5497	145
CGATCCT	208100	27.397226	145
CCGCTAA	26720	26.436083	3
GTCTCGC	98640	24.313288	4
GCTATGT	180430	24.153172	4
CGCTAAG	30350	22.71363	4
TCAGACC	133890	22.397512	2