EGAF00005787904 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787904
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	144584614
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	241506	0.16703437061428955	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	207160	0.14327942252555312	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	198746	0.13745999280393692	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	194036	0.13420238477103794	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	182113	0.1259560024830858	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	170493	0.1179191860622182	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	164964	0.11409512771531831	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	147315	0.10188843468503501	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	145840	0.10086827081061335	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	54810	52.151608	6
AGACCGC	58445	48.236404	4
CCGCGTT	60825	47.004433	7
CAGACCG	64730	44.241714	3
TCGACCG	97530	43.922028	145
GTGCTCT	131075	40.215256	145
CTCGCTA	75245	37.72284	1
GCGTTCT	77210	36.49119	9
ACCGCTA	21410	35.834846	2
TCGCTAT	80655	35.25506	2
CGCTATG	87050	32.777184	3
CCGCTAA	31410	26.322449	3
CGATCCT	194235	26.143631	145
CTTCGAC	127365	25.726852	145
GTGTGCG	73795	24.700518	145
GTCGCGT	9345	24.437365	1
CGCTAAG	35280	22.873606	4
CGCGTTC	124760	22.523687	8
TCAGACC	142360	21.244112	2
CTCGCGT	114515	20.599167	8