EGAF00005787960 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787960
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	105011818
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	208528	0.19857574506518877	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	164932	0.15706041771412815	No Hit
GGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCC	153619	0.14628734453487893	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	142257	0.13546760994081639	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	130629	0.12439457052348145	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	130147	0.12393557456552176	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA	129011	0.12285379156086985	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	123360	0.11747249247698958	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	122925	0.11705825338629981	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	113868	0.1084335098360072	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	34605	55.995697	6
CCGCGTT	37905	51.10319	7
AGACCGC	38415	50.260853	4
TCGACCG	54865	48.5343	145
CAGACCG	42345	46.065544	3
CTCGCTA	54170	44.11197	1
TCGCTAT	58785	40.79337	2
GCGTTCT	51340	37.768528	9
CGCTATG	63715	37.600975	3
ACCGCTA	16835	34.489605	2
GTGCTCT	92900	33.57921	145
CCGCTAA	22120	28.699684	3
CGATCCT	125860	28.635849	145
CGCGTTC	75935	25.50118	8
GTCGGCT	28445	25.314	1
CGCTAAG	25535	24.330446	4
CTTCGAC	73465	24.328178	145
CTCGCGT	116570	23.390244	8
TCGCGTC	117165	23.32143	9
GCTATGT	107525	22.51964	4