EGAF00005787964 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787964
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	147562295
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	247377	0.1676424184104754	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	239674	0.16242225020964873	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	231307	0.156752102561159	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	194568	0.1318548210435464	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	189464	0.1283959428795818	No Hit
GGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCC	175601	0.11900126654983241	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	169202	0.11466479292694653	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	149187	0.10110102990740284	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	148419	0.1005805717510696	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGCTA	75015	41.66368	1
TCGCTAT	80510	38.858864	2
CGCTATG	84685	36.86944	3
TCGACCG	32635	35.62131	145
ACCGCGT	37600	32.521393	6
CCGCGTT	39350	31.141874	7
AGACCGC	39880	30.1899	4
CAGACCG	44145	27.851757	3
CGGCGCT	144875	26.773489	145
TCGCGTC	119095	26.246023	9
CTCGCGT	118985	26.242779	8
CGATCCT	189890	23.77524	145
ACCGCTA	20990	23.108284	2
GCGTTCT	55125	22.075697	9
GCTCGCG	142780	21.974737	7
GCTATGT	144585	21.8507	4
CTTCGAC	53415	21.1531	145
GGCTCGC	154335	20.40568	6
GTCTCGC	89320	19.390278	4
CGCGTTC	62985	19.20651	8