EGAF00005787978 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787978
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	99845341
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	241041	0.24141436904902752	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	200907	0.2012182020591226	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	152031	0.1522664938367029	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	143832	0.14405479370339375	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	143432	0.14365417410913545	No Hit
CTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGGCC	119064	0.1192484284269208	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	117824	0.1180065076847201	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	116859	0.117040012913572	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	113857	0.11403336285866357	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	112736	0.11291062644575474	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	111378	0.11155052292324787	No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	109589	0.1097587517879277	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	107954	0.10812121919639694	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	33040	51.93807	6
TCGACCG	95100	51.760803	145
AGACCGC	34220	49.23124	4
CCGCGTT	36715	46.653896	7
ACCGCTA	19600	45.088905	2
CTCGCTA	59360	42.205833	1
TCGCTAT	66770	37.53694	2
CAGACCG	45600	37.536472	3
GTGCTCT	86315	36.29923	145
CGCTATG	73410	34.278393	3
GCGTTCT	49525	34.218933	9
CCGCTAA	28285	33.52821	3
CGCTAAG	33490	28.073803	4
CGATCCT	138695	27.019823	145
CTTCGAC	118950	25.597776	145
GAGTCTT	134660	24.951565	4
GGAGTCT	141105	23.763	3
AGTCTTG	148660	23.21775	5
GCTATGT	113355	22.420406	4
CACCGCT	42105	22.220407	1