EGAF00005787986 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787986
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	115590618
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA	266368	0.23044084771655085	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	240475	0.20804024077455838	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	208158	0.18008208936126632	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	183517	0.1587646153081386	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	169733	0.14683977206523802	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	155915	0.13488551467040344	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	141417	0.12234297423688832	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	138831	0.12010576844567092	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	135125	0.11689962588486204	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	133901	0.11584071641523709	No Hit
CACCGCTAAGAGTCGTACGAGGTCGATTTGGCGAGGGCGCTCCCGACGAC	116349	0.10065609304035383	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGCTCT	126640	49.9649	145
ACCGCGT	72305	49.675835	6
AGACCGC	73690	48.262093	4
CCGCGTT	78805	45.507053	7
CAGACCG	82435	43.68523	3
GCGTTCT	93775	38.075718	9
ACCGCTA	46025	35.59471	2
CTCGCTA	80580	35.032112	1
CCGCTAA	51970	32.919006	3
TCGCTAT	88130	31.973324	2
TCGACCG	101990	31.822563	145
CGCTAAG	54720	31.71911	4
CGCTATG	95335	29.68104	3
GTCTCGC	78205	27.650301	4
TCAGACC	142955	25.887589	2
CTTCGAC	137405	25.33741	145
AGAGTCG	70790	25.007315	9
CGGTGCT	105245	24.656225	145
CTCAGAC	166530	23.86574	1
CGCGTTC	154420	23.085886	8