EGAF00005787988 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005787988
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	117054058
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	225831	0.1929288090123283	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	187047	0.15979539983141808	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	159622	0.1363660540500014	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	148720	0.12705240855468677	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	146613	0.12525238552601056	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	135592	0.11583707760050488	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	133459	0.11401484261229115	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	128169	0.1094955631525393	No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	118593	0.10131472759363884	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGACCG	67765	51.81941	145
CTCGCTA	65505	41.39187	1
ACCGCGT	31255	40.85851	6
AGACCGC	33365	38.08626	4
CCGCGTT	33820	37.815437	7
TCGCTAT	73215	37.000656	2
CAGACCG	36310	35.862606	3
CGCTATG	79675	34.043774	3
CGATCCT	153450	28.269897	145
CTTCGAC	91065	26.268238	145
GCGTTCT	49425	25.926798	9
CGCGTTC	51215	24.873386	8
GTGCTCT	102515	24.829372	145
ACCGCTA	16920	23.923115	2
GACCGCG	56160	22.895855	5
GCTATGT	128615	21.329023	4
CCGCTAA	22280	19.688768	3
GTCTCGC	67680	19.026545	4
CGTATCG	10185	18.449667	3
CCCGTAT	19840	18.288025	1