EGAF00005788002 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788002
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	118561905
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	227851	0.19217892964860847	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	208774	0.17608860114047595	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	170793	0.1440538594584829	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	160308	0.13521037807211347	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	140334	0.11836348277298682	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	127930	0.10790143764980835	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	125139	0.10554739315296933	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	55290	59.283207	6
AGACCGC	58055	56.16142	4
CCGCGTT	59560	55.06414	7
CAGACCG	64710	50.719456	3
GCGTTCT	73280	44.712524	9
GTGCTCT	121300	44.29741	145
TCGACCG	48255	41.292027	145
CTCGCTA	71215	39.266167	1
TCGCTAT	78735	35.609463	2
CGCGTTC	91960	35.549442	8
ACCGCTA	22095	34.642864	2
CGCTATG	85165	32.83344	3
GACCGCG	114280	28.838552	5
CCGCTAA	29305	27.888529	3
TCAGACC	124260	27.506117	2
CGATCCT	144935	26.243334	145
CTCAGAC	153470	25.107859	1
CGCTAAG	33270	24.17525	4
CTTCGAC	63930	23.262796	145
GCTATGT	129095	21.909122	4