FastQCFastQC Report
Tue 26 Apr 2022
EGAF00005788008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122822754
Sequences flagged as poor quality0
Sequence length35-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1977800.16102879438772397No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA1930960.15721516877890557No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1803010.14679771795379218No Hit
CTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGGCC1626230.13240461942418258No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1458630.11875893940629274No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1425090.11602817503994414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)