EGAF00005788026 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788026
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	100409924
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	239505	0.23852721967999893	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	178815	0.17808498689830699	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	167200	0.166517405191941	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	153714	0.15308646185211733	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	149135	0.14852615564174712	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	145932	0.1453362319047269	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	132265	0.13172502749827797	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	126769	0.12625146494483952	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	115129	0.11465898530109435	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	113279	0.11281653793503518	No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	110582	0.11013054845056948	No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG	105759	0.10532723837137851	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	103152	0.10273088146147784	No Hit
GGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCC	100560	0.1001494633140047	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGACCG	78380	44.6684	145
ACCGCGT	26350	43.28359	6
CTCGCTA	61420	43.168816	1
CCGCGTT	27965	40.760593	7
TCGCTAT	66975	39.626022	2
AGACCGC	28755	38.86939	4
CGCTATG	72090	36.89121	3
ACCGCTA	15995	36.04202	2
CAGACCG	32595	35.13095	3
CGATCCT	152280	28.029228	145
CTTCGAC	101690	27.778322	145
GCGTTCT	40910	27.607685	9
CCGCTAA	22805	27.581043	3
GTCGGCT	24980	24.622215	1
GTGCTCT	78815	23.97201	145
CGCTAAG	26240	23.672104	4
GCTATGT	117550	22.862982	4
TTCGGCG	37945	22.800869	7
CTCGCGT	85430	22.148792	8
TCGCGTC	85595	22.136585	9