EGAF00005788030 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788030
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	112687821
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	49

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	234459	0.20806063860264015	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	234231	0.20785830972807612	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	152115	0.1349879682206296	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	142370	0.1263401836477076	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	139404	0.12370813346368636	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	138176	0.12261839724454339	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	128763	0.11426523191002157	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	127544	0.11318348235697982	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	51145	62.282017	6
CCGCGTT	55470	57.449627	7
AGACCGC	56695	56.12717	4
TCGACCG	56280	54.42489	145
CAGACCG	61310	52.299812	3
GCGTTCT	68140	46.757736	9
GTGCTCT	119895	44.130165	145
CTCGCTA	67375	41.85308	1
TCGCTAT	66645	41.298824	2
CGCTATG	68810	40.07085	3
CGCGTTC	80105	39.72436	8
GACCGCG	85865	37.182426	5
CGATCCT	143350	28.609974	145
CTTCGAC	82225	26.017471	145
TCAGACC	130605	25.837765	2
CTCAGAC	158960	23.994423	1
CGGTGCT	71365	23.764488	145
GCTATGT	118645	23.59502	4
CCGCTAA	21800	22.812418	3
ACCGCTA	22290	21.673983	2