EGAF00005788040 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788040
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	111760680
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	224900	0.2012335644342894	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	200669	0.17955241503541317	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	158362	0.14169741987969292	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	149860	0.13409009322420012	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	132942	0.11895239005346066	No Hit
GGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCC	127483	0.11406784568597829	No Hit
CCCCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGG	120613	0.10792078215701621	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	119327	0.10677010912961517	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	116721	0.10443834092634369	No Hit
CCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGG	115627	0.10345946356088744	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	37525	59.68076	6
CCGCGTT	40390	55.156357	7
AGACCGC	44685	49.723316	4
CAGACCG	46905	47.940308	3
TCGACCG	27995	44.620983	145
CTCGCTA	62360	41.73676	1
GCGTTCT	54125	41.030396	9
TCGCTAT	66675	38.548035	2
CGCGTTC	62075	35.64948	8
CGCTATG	72660	35.34796	3
GTGCTCT	105550	34.56251	145
GACCGCG	75930	29.563274	5
CGATCCT	140415	27.819283	145
ACCGCTA	22150	26.509804	2
GTCGGCT	35730	24.83057	1
CCGCTAA	25455	23.891724	3
GCTATGT	115260	22.634394	4
GGATTCG	46050	22.62976	4
CGCTAAG	26125	22.629583	4
TCAGACC	105115	22.62437	2