EGAF00005788046 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788046
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	114029054
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	59

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	261042	0.22892586656028913	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	236546	0.2074436222192986	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	209121	0.1833927342763012	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	158831	0.13928993921145744	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	136686	0.11986945011400339	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	130268	0.11424106000212893	No Hit
CTCGCTATGTTGCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC	128155	0.11238802349443328	No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG	123340	0.10816541545630994	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	122857	0.10774183919828012	No Hit
CCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGG	120968	0.10608524385372871	No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG	118523	0.10394105347922995	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	117739	0.10325350940822503	No Hit
CTCCGTCTTCGCGGGCGGCGGCGGCGCCGCCCTCCCCGTCTCTCTCAGCC	115444	0.10124086445547466	No Hit
CTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGGCC	114491	0.10040511254263322	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGCTCT	112605	63.377106	145
ACCGCGT	64560	58.51823	6
AGACCGC	66635	56.25862	4
CAGACCG	68830	54.906998	3
CCGCGTT	69540	54.336452	7
GCGTTCT	84115	48.17188	9
ACCGCTA	29235	43.967113	2
CTCGCTA	85740	37.313343	1
ATCGCGT	8095	37.3023	6
CCGCTAA	38250	36.26321	3
GTCGCGT	12460	34.55622	1
TCGACCG	74120	33.486702	145
TCGCTAT	96780	33.04024	2
TCAGACC	128450	30.281187	2
CGCTAAG	45675	30.21829	4
CGCTATG	106915	30.041586	3
CGCGTTC	140895	28.701635	8
CTCAGAC	149755	28.371685	1
CGATCCT	172960	27.136206	145
CACCGCT	50620	25.680185	1