EGAF00005788058 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788058
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	185485449
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	340706	0.1836834111984709	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	291663	0.1572430622307198	No Hit
CTCCGTCTTCGCGGGCGGCGGCGGCGCCGCCCTCCCCGTCTCTCTCAGCC	232001	0.12507773588212842	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	229492	0.1237250691292771	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	224311	0.12093185811033619	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	192920	0.10400815861302413	No Hit
CTGGAGGCGACAGCGAGGGCTGTCTGCCGCGTCAGAGGACCCCGCCGGCC	191544	0.10326632144605585	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	88730	58.90332	6
AGACCGC	92430	56.155483	4
CCGCGTT	96370	54.278713	7
CAGACCG	103645	50.708645	3
GTGCTCT	183215	48.92451	145
ACCGCTA	47025	45.20142	2
GCGTTCT	119640	43.50977	9
TCGACCG	144085	40.574184	145
CTCGCTA	84950	38.97639	1
CCGCTAA	60480	37.841248	3
TCGCTAT	93085	35.57712	2
CGCTATG	100005	33.121212	3
CGCTAAG	71470	31.898275	4
TCAGACC	197210	28.021116	2
CACCGCT	84460	26.160477	1
CGCGTTC	201095	25.819687	8
CTCAGAC	242090	25.781157	1
CTTCGAC	180785	24.786036	145
CTCGCGT	100775	24.639698	8
TCGCGTC	102750	24.233885	9