EGAF00005788062 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788062
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	118109008
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	51

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	227902	0.19295903323478936	No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	178056	0.15075564769793004	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	172105	0.14571708196888758	No Hit
CCCCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGG	169304	0.14334554397408875	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	162311	0.13742474240406793	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	143992	0.12191449444736681	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	143309	0.1213362151005451	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	131763	0.11156050011020327	No Hit
CCCGGGTGCCCGGGCCCCCCTCGCGGGGGACCGTGCCCCCGCCGCCGGGG	131180	0.11106688831050042	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	35370	50.25202	6
CCGCGTT	38160	46.594593	7
AGACCGC	40460	43.78932	4
CAGACCG	44330	40.49719	3
TCGACCG	43005	39.670246	145
CTCGCTA	74955	38.78442	1
TCGCTAT	80745	36.032772	2
GCGTTCT	52795	33.762413	9
CGCTATG	87300	33.372868	3
CGCGTTC	63040	28.063927	8
ACCGCTA	20710	26.863047	2
GTGCTCT	109595	26.65962	145
GACCGCG	69520	25.612665	5
CGATCCT	166010	25.09758	145
CCGCTAA	23735	24.748028	3
CTTCGAC	62830	23.150543	145
GCTATGT	134155	21.930254	4
CGCTAAG	26025	21.593283	4
GTCTCGC	77710	20.933918	4
CGGGTGC	124680	20.919735	5