EGAF00005788094 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788094
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	133471449
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	50

Per base quality graph

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	255539	0.19145592702750983	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	231351	0.1733336992542877	No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGGGAGAAGAACGA	225026	0.16859485806586244	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	159236	0.1193034174672068	No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA	149307	0.11186437333125829	No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT	144147	0.10799837799018726	No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA	141498	0.10601368387032346	No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC	136317	0.10213195482728293	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	134497	0.10076836732326178	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	55435	53.288544	6
AGACCGC	57570	50.913784	4
CCGCGTT	58130	50.764675	7
TCGACCG	62930	45.484627	145
GTGCTCT	130225	43.851456	145
CAGACCG	69950	42.37261	3
CTCGCTA	70785	40.180416	1
GCGTTCT	75055	39.242836	9
ACCGCTA	25255	36.632706	2
TCGCTAT	78010	36.30976	2
CGCTATG	84810	33.405907	3
CCGCTAA	35235	28.397715	3
CGCGTTC	105645	27.739054	8
CGATCCT	159555	26.219368	145
CTTCGAC	86805	25.597673	145
CGCTAAG	40940	24.167917	4
GACCGCG	128240	23.180311	5
TCAGACC	137660	22.959078	2
GTCGCGT	7795	22.591133	1
CGGTGCT	86365	22.4536	145