EGAF00005788112 FastQC Report

Basic Statistics

Measure	Value
Filename	EGAF00005788112
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135334558
Sequences flagged as poor quality	0
Sequence length	35-151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA	247665	0.1830020385480551	No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT	189062	0.13969972104242584	No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT	183506	0.13559433947388366	No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT	152516	0.11269553191284667	No Hit
GGCCCGGCTCGCGTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCC	146554	0.10829015305905829	No Hit
GTCCAGAGTCGCCGCCGCCGCCGGCCCCCCGGGTGCCCGGGCCCCCCTCG	142800	0.10551628653488491	No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC	141782	0.10476407659306058	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	59175	55.953278	6
AGACCGC	61970	53.179783	4
CCGCGTT	63850	51.837032	7
TCGACCG	75685	49.90974	145
CAGACCG	66895	49.806427	3
GCGTTCT	79080	41.693268	9
GTGCTCT	136295	41.382164	145
ACCGCTA	20750	37.205906	2
CTCGCTA	57245	36.25037	1
TCGCTAT	60045	34.40309	2
CGCTATG	64110	32.021255	3
CGCGTTC	112345	29.291445	8
CTTCGAC	101510	28.50415	145
CCGCTAA	31240	26.64767	3
CGATCCT	141735	24.757536	145
GACCGCG	135615	24.496416	5
TCAGACC	147035	23.718693	2
CGCTAAG	34810	23.549383	4
CTCGCGT	114680	22.586882	8
TCGCGTC	114965	22.57512	9