FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90762041
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTGGACG198650.019.5053311
CCCGGAA271050.019.2308351
GCTTGGG266400.019.2030961
GGGTCTG375650.018.8840081
ACGAGAG169950.018.8475975
AGGAACG214800.018.7369378
GCGGAGA116200.018.667584
TGACGGA176900.018.66619110
AGGGCGT137650.018.6516933
TGGGAAG162750.018.5623111
TGCTTGC405050.018.5590321
GCCCGAA219800.018.4693341
GGTTGGG147850.018.3013977
CCGTGGA163200.018.2993416
CGGAACC279700.018.2585051
GGGCGTG113350.018.2441464
GGGAAGC99400.018.2386232
CGGGGTG78500.018.2303434
CGTGGCG107100.018.198989
GAAGACG112100.018.1629586
Produced by FastQC (version 0.11.5)