FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93843810
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAACCC350950.018.9379621
GCCGAGC230000.018.5710744
GAGACCC298450.017.9304681
GTGGAGA236150.017.8854481
TACCGGG230700.017.7023121
CGTCGGG135650.017.6614119
CGCGTGC151550.017.4125189
CATGACG188550.017.3908168
CCGAGCA222850.017.3844245
TCGCGTG152800.017.291568
TAGCGTG154750.017.180297
ATGGGAG154650.017.1520861
GGCGAGA108150.017.036714
CGAAGTG171350.017.0244465
TGACGCG158100.016.9448131
GGGAATC225700.016.9363843
GATGAGG212400.016.9069521
AGCCGAT194300.016.8591798
AACGGGA186650.016.8168031
CGATGCG167750.016.8160951
Produced by FastQC (version 0.11.5)