FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788219

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788219
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90253158
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGCGAGG114650.019.7351554
CGCGGTG132050.019.5003934
TCGGGAC212750.019.3093241
GGGCTAC297850.019.2790261
TGCGGAG222000.019.0264763
GCGGTGG97550.018.8759255
GGCAGCG140700.018.8096586
ACGCGAG135650.018.788253
AGTCGGC203250.018.7032058
CTGGACG201000.018.697061
CGGGAGT124050.018.6741873
CCGGACA275000.018.6239741
GCGTGGT133500.018.4069563
CTGAGCG137700.018.3092171
CCCGAAG218900.018.2590711
CTGTGGG196700.018.2162361
GCGAGAA178150.018.2042581
CGGGACG74150.018.1952462
GTGCGTG162300.018.1852321
GGGCGTG66700.017.9425184
Produced by FastQC (version 0.11.5)