FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788229

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788229
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103616826
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATGCG243000.019.0071181
CCCGAAG242700.018.8763711
GATGGAG224200.018.7102661
GGAACCC305050.018.537221
GGAATGG201300.018.5087531
AGGGAGG161250.018.5050588
CTCGAGG218200.018.4931051
GATGCGG143350.018.376812
GAACGCA346850.018.3692113
CTGGACG182450.018.3511431
ATGCGAT319450.018.3357751
CGGAGTG114450.018.3169165
TCGAAGG234000.018.21831910
AGGCAGG170500.018.191368
AACGGGA256500.018.1183471
GAAGCGG121900.017.9822489
GGTTCGG200100.017.94647
GGGAGCG76300.017.9180955
GCAGGCT221350.017.9165651
ACGCGAG191500.017.8911823
Produced by FastQC (version 0.11.5)