FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42928933
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT2891650.070.838431
AGCAGTG3075800.066.5796662
GCAGTGG3794800.054.049293
CAGTGGT3914200.052.3459934
AGTGGTA3910450.052.2836955
GTGGTAT4074250.050.1571926
GTATCAA4235950.048.2346579
TGGTATC4256150.048.0388877
GGTATCA4276450.047.818618
CAACGCA4140250.027.72831312-13
ATCAACG4156800.027.61342410-11
ACGCAGA4259300.026.96507614-15
TACATGG4209200.026.8082622-23
GCAGAGT4323950.026.47271216-17
AGAGTAC4319200.026.38926318-19
AGTACAT4303800.026.3144620-21
CATGGGA2246900.025.61497924-25
TCAACGC4141000.024.73083912-13
GAGTACA4201050.024.1555220-21
TATCAAC4241050.024.14252510-11
Produced by FastQC (version 0.11.5)