FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788236

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788236
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42299852
Sequences flagged as poor quality0
Sequence length89
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AAGCAGT2842050.070.910361
AGCAGTG3021150.066.680542
GCAGTGG3717200.054.2464333
CAGTGGT3842150.052.409674
AGTGGTA3850800.052.232675
GTGGTAT4012200.050.0932246
GTATCAA4165800.048.2549449
TGGTATC4180600.048.095097
GGTATCA4204750.047.8346448
CAACGCA4078050.027.64137512-13
ATCAACG4090750.027.55454810-11
ACGCAGA4199700.026.84773414-15
TACATGG4140650.026.77230322-23
GCAGAGT4256500.026.40225616-17
AGAGTAC4247700.026.35208318-19
AGTACAT4229600.026.29118520-21
CATGGGA2210550.025.50293224-25
TCAACGC4077400.024.70792612-13
GAGTACA4131750.024.15117820-21
TATCAAC4176500.024.12165510-11
Produced by FastQC (version 0.11.5)