FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788239

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788239
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58046101
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGACG209250.019.5438421
GGGATGA160650.019.100761
AGGGAAG112550.019.028863
CGGGAGC69350.018.9862844
CGGCGAG61100.018.9394263
CGAGAGG95050.018.80566
ACAAAGA206750.018.524281
GCGTGGT104200.018.4951863
CTTCGGC204400.018.4855256
CGCGGTT153550.018.46051610
TCTACCG239050.018.3731921
GCGAGAA119950.018.2530611
TTGGGCG95450.018.246851
GACGCGG54050.018.2367742
GCGACGC86300.018.228922
AGACGCA151450.018.1862968
AGGCGTG70650.018.1854064
GTCGCGG77200.018.1665348
GGTGGAG76050.018.079937
CCCGGAA130650.017.9708181
Produced by FastQC (version 0.11.5)