FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91899730
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGAACCC337450.019.0519471
GCCGAGC223000.018.9412484
GTGGAGA231650.018.0494581
GAGACCC285500.017.9979741
TACCGGG223050.017.5713271
CCGAGCA214700.017.567855
CGTCGGG122850.017.5225459
TAGCGTG143000.017.3072387
CGCGTGC149300.017.2547459
TCGCGTG149950.017.245958
CGAAGTG160700.017.242315
ATGGGAG151750.017.119071
CATGACG183050.017.107988
AACGGGA181850.017.0506361
AGCCGAG126400.017.0217423
AGCCGAT192050.016.9763748
AGACGAG116550.016.9596488
TGACGCG153200.016.949861
GGGAATC218250.016.873823
TAGGGTT272050.016.7725141
Produced by FastQC (version 0.11.5)