FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788269

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788269
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50625078
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCCGAG243350.019.8438328
CCCGAGA152000.019.3802499
CCGAGAC157800.018.67398810
TGAGACT198900.018.321431
CCCGGAA147400.018.2694361
TTCCCGA244100.018.205647
TGGGAAG146250.018.0065921
GAGACCC183850.017.8989891
GTGCACG175300.017.64781
TCACGGG169450.017.594351
GCACGTG158500.017.462331
TGCGGAC82300.017.36123810
CCGGAAG114350.017.240612
GTGTGGC123550.017.2070221
GTGCTGG102850.017.1484321
AGCTCAA157350.017.0651951
CTGCGAG100300.017.0465581
CCCTGAT145900.017.0386371
CTGGACG88450.016.9902971
GCGGAAA124700.016.9600491
Produced by FastQC (version 0.11.5)