FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788271

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788271
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59795054
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TGCGACG215300.019.6424641
GGGATGA165100.019.0845781
CGAGAGG97400.018.8261896
CGGGAGC73000.018.7903184
CGCGGTT154350.018.7070910
AGGGAAG120300.018.6258433
CGGCGAG63500.018.5873093
ACAAAGA210350.018.5251881
CCCGGAA141550.018.51351
CTTCGGC205800.018.4239046
GCGTGGT108300.018.4144973
CGGGGTG49950.018.3442544
GTCGCGG79900.018.337548
TCTACCG241800.018.3269331
AGGCGTG70550.018.2578814
TTGGGCG98200.018.2389371
GTACGTG152300.018.1860948
GGCGAGT64000.018.1842844
AGACGCA148050.018.1657818
GTGGGAC114200.018.146738
Produced by FastQC (version 0.11.5)