FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788291

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788291
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95992670
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACAGGG286900.018.7543051
GCGAGGT154000.018.3495453
GGGGTGA86600.017.9222555
CTGGACG158850.017.7673571
AGCCGAG135050.017.5849023
ACGGGGT171750.017.5483263
CGCAGCG113850.017.487556
CGCGGTT198700.017.42124610
GTGGGAG110250.017.413
GGCGTTG187250.017.3996332
AGGGCCT268650.017.390651
CTCGAGG197850.017.3850351
CGGACAC235250.017.343341
AGTGCCG185800.017.3340341
CGGCGAG62850.017.2390333
AGCGTGG97650.017.161342
GCCGATG248400.017.1118011
GCTTGGG316250.017.1112061
CGAGGAA187900.017.1110271
GGAATGG274750.017.0686191
Produced by FastQC (version 0.11.5)