FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences44460903
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGTG62500.019.7997474
TGGGAAG106200.019.2587911
CGGGAAG52300.019.0552063
CGCGTGA111700.018.9211851
ATGGGAG56700.018.8024671
GCCGATG118550.018.7652231
GGGCTAG80150.018.7608343
TGAGCGC134550.018.528931
CTCGAGG86500.018.4300441
CGTGATC98850.018.0715963
ACGGGGT77100.017.9906923
GGCTAGG70200.017.8943614
TCCCGAG150450.017.7223878
GTGAGCG42450.017.6980258
CCAGCGC94600.017.6624896
GTGCTGG83450.017.6270311
GCCCGAA97700.017.522221
AATGCGG52350.017.4608810
CCGAGAC67400.017.42982910
CCCGAGA67500.017.4203059
Produced by FastQC (version 0.11.5)