FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788313

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788313
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93064472
Sequences flagged as poor quality0
Sequence length28
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TTGATGG374200.019.1300261
CGGGACT267950.018.8348981
CGGACAC261050.018.2446351
GGATAGA247600.018.173814
GATAGCT321850.018.078561
CGTGATC245150.018.0727673
CACCGTG245800.017.9663878
GGACGAG133700.017.9101922
CACGCGC236300.017.7810218
CCGATGG209750.017.7728611
CCTCGGA215450.017.7353746
TTAATCC394400.017.6449831
GGCTCGA169450.017.5907675
TGCGGAG176650.017.5777933
GGGATAG178700.017.4623183
CATGCGG188200.017.3860761
GGGACCT178450.017.3612061
ACTCCCA299650.017.17671
AGGATAG227150.017.1612173
CCGGACA187300.017.1522031
Produced by FastQC (version 0.11.5)