FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45837735
Sequences flagged as poor quality0
Sequence length28
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGGTG65450.019.8485574
TGGGAAG103900.019.2823451
GGGCTAG86350.019.0826263
CGCGTGA120700.019.0230711
GCCGATG120000.018.9415051
CTCGAGG87700.018.6291181
TGAGCGC140150.018.6203141
CGGGAAG56350.018.564163
ACGGGGT79700.018.0111263
ATGGGAG57650.017.9960771
GTGCTGG84550.017.8397711
CGTGATC103800.017.697333
GGGGTGT34550.017.6380425
ATCGTGA98050.017.6164131
GGCTAGG76350.017.60564
TCCCGAG149700.017.5320078
TGTGGCG70950.017.5068071
GCCCGAA99600.017.3643551
CTGAGCG71050.017.3428081
CCAGCGC96700.017.335766
Produced by FastQC (version 0.11.5)