EGAF00005788393 FastQC Report

Summary

Basic Statistics
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Adapter Content
Kmer Content

Basic Statistics

Measure	Value
Filename	EGAF00005788393
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	70546160
Sequences flagged as poor quality	0
Sequence length	100
%GC	52

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

No overrepresented sequences

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAGTCG	11825	0.0	56.042282	94
CAAGTCG	27435	0.0	45.99781	94
GAAGTCG	38890	0.0	36.570328	94
AAAGTCG	18255	0.0	35.52999	94
ATAAGTC	19165	0.0	11.403601	94
ACAAGTC	36510	0.0	10.362914	94
CGAAGTC	21255	0.0	9.618914	94
CTAAGTC	21575	0.0	9.105909	94
GCAAGTC	40575	0.0	8.8382015	94
AGAAGTC	67135	0.0	8.169955	94
GGAAGTC	63815	0.0	8.005798	94
TTAAGTC	21480	0.0	7.8552136	94
GTAAGTC	26825	0.0	7.358807	94
CCAAGTC	60085	0.0	7.08696	94
TCAAGTC	42525	0.0	6.5982366	94
TGAAGTC	66355	0.0	5.7160726	94
CAAAGTC	59280	0.0	5.224865	94
GCGAAGT	12715	0.0	5.045615	92-93