FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71905076
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG160950.060.88536594
CAAGTCG338950.050.14072494
AAAGTCG227900.040.7305894
GAAGTCG435400.038.7744694
ATAAGTC221650.013.44371794
ACAAGTC402500.011.79378994
CTAAGTC239900.011.57857394
GCAAGTC439100.010.511044594
GGAAGTC673700.09.42511694
TTAAGTC251250.09.39064794
AGAAGTC731100.08.65941794
TCAAGTC462700.08.63410494
CCAAGTC654800.08.58460694
CGAAGTC237900.08.5741994
GTAAGTC312500.07.971199594
TGAAGTC692450.06.936817694
GATCGTA60500.06.680991694
GAAAGTC447000.06.36129794
CAAAGTC641850.06.24616394
TAAAGTC290900.05.76796194
Produced by FastQC (version 0.11.5)