FastQCFastQC Report
Wed 20 Apr 2022
EGAF00005788418

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788418
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences70659755
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TAAGTCG135000.058.66296494
CAAGTCG311200.046.1542494
AAAGTCG207300.037.5229194
GAAGTCG413600.035.68181694
ATAAGTC201750.011.90433794
ACAAGTC385650.011.40723494
CTAAGTC219050.010.42775694
GCAAGTC428450.08.86357894
TTAAGTC217100.08.681252594
GGAAGTC667250.07.95953594
AGAAGTC693800.07.86494794
CGAAGTC226700.07.650198594
GTAAGTC285900.07.64428194
CCAAGTC643050.07.62320294
TCAAGTC441700.07.246320794
GAAAGTC431900.06.333410394
TGAAGTC662400.06.17300794
CAAAGTC626100.05.52499694
Produced by FastQC (version 0.11.5)