FastQCFastQC Report
Sat 23 Apr 2022
EGAF00005788422

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00005788422
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39168484
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACGGT48600.047.483541
GTATCGA54700.041.930536
AAGTCGG104150.040.29860794
GGTATCG60100.038.945095
GACGGTA60000.038.9316672
CGGTATC60650.038.669424
TATCGAT61300.038.0293667
ATCGATA64350.036.738158
ACGGTAT64100.036.0748833
TCGATAA67750.034.6863489
TAAGTCG61700.025.29011394
CGCTCTA71050.023.6488452-53
CTATCGG50100.023.54690660-61
GATATCG43350.023.5271055
TTAACCC181600.023.52
TCTATCG52050.023.47742758-59
TATCGGA53650.023.17148260-61
CGATTGA51650.022.29428990-91
TAACCCT194250.021.727673
ATTAACC206600.021.3615681
Produced by FastQC (version 0.11.5)